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Algal blooms
Michalak Lab
Home Research Labs Michalak Lab

Michalak Lab

Anna M. Michalak     
Director, Department of Global Ecology
Carnegie Institution for Science
260 Panama St.
Stanford, CA 94305
michalak@carnegiescience.edu

Bio     C.V. 

 

Lab Tabs

Our Research

Our research focuses primarily on two areas. We are interested in understanding the cycling and emissions of greenhouse gases at the Earth surface at urban to global scales – scales directly relevant to informing climate and policy – primarily through the use of atmospheric observations that provide the clearest constraints at these critical scales. We are also interested in climate change impacts on freshwater and coastal water quality via influences on nutrient delivery to, and on conditions within, water bodies. Our approach is highly data-driven, with a common methodological thread being the development and application of spatiotemporal statistical data fusion methods for optimizing the use of limited in situ and remote sensing environmental data.

Summaries of Recent Publications

News
Aug
19
2020

Anna Michalak Named Director of Global Ecology

By Carnegie HQ
Palo Alto, CA— Anna Michalak has been named the Director of Carnegie’s Department of Global Ecology. As a world-renowned researcher, her leadership will be invaluable as Carnegie works to rebuild the ...
  • Read more about Anna Michalak Named Director of Global Ecology
Oct
14
2019

Lakes worldwide are experiencing more-severe algal blooms; climate change is likely hampering recovery efforts

By Carnegie HQ
Washington, DC— The intensity of summer algal blooms has increased over the past three decades, according to a first-ever global survey of dozens of large, freshwater lakes, which was conducted by ...
  • Read more about Lakes worldwide are experiencing more-severe algal blooms; climate change is likely hampering recovery efforts
Apr
24
2019

Changes in rainfall and temperatures have already impacted water quality

By Carnegie HQ
Washington, DC— Changes in temperature and precipitation have already impacted the amount of nitrogen introduced into U.S. waterways, according to new research from a team of three Carnegie ...
  • Read more about Changes in rainfall and temperatures have already impacted water quality
Feb
26
2019

Can we address climate change without sacrificing water quality?

By Carnegie HQ
Washington, DC— Strategies for limiting climate change must take into account their potential impact on water quality through nutrient overload, according to a new study from Carnegie’s Eva Sinha and ...
  • Read more about Can we address climate change without sacrificing water quality?
More News
Lab PI

Anna Michalak

Anna M. Michalak

Director

Global Ecology
Carnegie Institution for Science
  • michalak@carnegiescience.edu
  •  
  • Office:  
  • 260 Panama Street
    Stanford, CA 94305, US
  •  

Profile

Bio

Dr. Anna M. Michalak is the Director of the Department of Global Ecology of the Carnegie Institution for Science and a Professor in the Department of Earth System Science at Stanford University. Prior to joining Carnegie, she was the Frank and Brooke Transue Faculty Scholar and Associate Professor at the University of Michigan. She holds a Ph.D. and M.S. in Civil and Environmental Engineering from Stanford University, and a B.Sc.(Eng.) in Environmental Engineering from the University of Guelph, Canada.

Dr. Michalak studies the cycling and emissions of greenhouse gases at the Earth surface at urban to global scales – scales directly relevant to informing climate and policy – primarily through the use of atmospheric observations that provide the clearest constraints at these critical scales. She also explores climate change impacts on freshwater and coastal water quality via influences on nutrient delivery to, and on conditions within, water bodies. Her approach is highly data-driven, with a common methodological thread being the development and application of spatiotemporal statistical data fusion methods for optimizing the use of limited in situ and remote sensing environmental data.

She is the lead author of the U.S. Carbon Cycle Science Plan, a former Editor of the journal Water Resources Research, and Chair of the scientific advisory board for the European Integrated Carbon Observation System. She is the recipient of the Presidential Early Career Award for Scientists and Engineers (nominated by NASA), the NSF CAREER award, and the Leopold Fellowship in environmental leadership.

Affiliation
Carnegie Affiliation: 
DGE Employees
DGE Affiliation: 
DGE Faculty
Labs: 
Michalak Lab
CV
Download: 
PDF icon CV_Michalak_2020_01 (1).pdf
Scientific Interests
Atmosphere
Biogeochemistry
Biosphere
Carbon dioxide
Climate
Emissions
Energy
Freshwater
Land
Methane
Remote sensing
Websites
People

  • Tristan Ballard (Graduate Student)

    Tristan’s research focuses on understanding how historical and future meteorological and climate variability impact riverine ecosystems. In particular, he is interested in developing robust statistical models for estimating climate impacts 1) on large-scale nitrogen runoff, 2) on historical river temperature regimes, and 3) on the increasing likelihood of extreme river temperatures into the future. 

    Tristan is currently a 4th year PhD student in the Department of Earth System Science at Stanford University.

     

  • Kelsey Foster (Graduate Student)

    Kelsey is a first year PhD student in the Department of Earth System Science at Stanford. She is broadly interested in the impacts of greenhouse gas emissions on different components of the Earth system. More specifically, she is interested in studying biospheric carbon flux variability and anthropogenic methane emissions. Her prior research focused on quantifying anthropogenic methane emissions in California, with a focus on emissions from oil refineries.

  • Julian Merder (Postdoctoral Fellow)

    With the help of mathematical models and statistics I try to tackle ecological questions ranging from molecular up to global scales. During my PhD, I developed statistical techniques and software to improve the performance of ultrahigh-resolution mass spectrometry and derived new ways to link the composition of dissolved organic matter to biotic and abiotic factors. I am generally interested in all branches of ecology to better understand and quantify the dangers we will face under anthropogenic climate change. In the Michalak Lab, I will develop stochastic population models in conformance with global datasets to better understand the causes and frequencies of harmful algal blooms under changing climate.

  • Mae Qiu (Scientific Programmer)
  • Wu Sun, Postdoctoral Research Associate

    Wu Sun (Postdoctoral Fellow)

    Wu Sun is a Postdoctoral Research Associate in Michalak Lab. His research aims to understand patterns and variability in terrestrial photosynthesis through the synergy between observations and process-based models. He is currently using geostatistical approaches to constrain the patterns of photosynthesis in North America.

    Before joining Michalak Lab, Wu obtained his B.Sc. in Geology from Nanjing University and Ph.D. in Atmospheric and Oceanic Sciences from UCLA. His research focused on using carbonyl sulfide (COS) to infer ecosystem photosynthesis. His Ph.D. work used chamber observations and reactive transport modeling to understand COS exchange between soils and the atmosphere. His latest work explored applications of COS as a leaf-scale tracer for stomatal conductance. He is transitioning from a frequentist to a Bayesian.

  • Gang Zhao (Postdoctoral Research Fellow)
Alumni (Ph.D. students and postdoctoral fellows) listed in order of departure 

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Eva Sinha

Eva Sinha (Ph.D. 2018, AGU Outstanding Student Paper Awardee)   

"Understanding the impact of climate change, land use, and land management on riverine nitrogen loading"

Now: Post Doctorate RA B, Pacific Northwest National Laboratory

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Jeff Ho

Jeff Ho  (Ph.D. 2018, Woods Institute Rising Environmental Leader, NSERC Postgraduate Scholar (PhD) )

"Understanding climatic and terrestrial drivers of lake phytoplankton blooms using high resolution satellite imagery"

Now: Director of Science and Product, Cloud to Street

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Yoichi Shiga

Yoichi Shiga (Ph.D. 2018, AGU Outstanding Student Paper Awardee)

"Characterizing natural and anthropogenic carbon flux spatiotemporal variability at regional scales using a dense network of atmospheric CO2 observations over North America" 

Now: ‎Visiting Associate Scientist, Earth Science, Universities Space Research Association (USRA), at NASA Ames Research Center

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Yuanyuan Fang

Yuanyuan Fang (Postdoctoral researcher 2012-2014, Senior Research Associate 2014-2018)

Now: Statistician, Bay Area Air Quality Management District

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Dario Del Guidice

Dario Del Giudice (Postdoctoral Researcher 2015-2018)

Now: Postdoctoral Research Scholar, Department of Civil, Construction, and Environmental Engineering, North Carolina State University

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Scot Miller

Scot Miller (Distinguished Postdoctoral Fellow 2015-2017)

Now: Assistant Professor, Department of Environmental Health and Engineering, Johns Hopkins University

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Friedemann Reum

Friedemann Reum (Visiting Researcher 2016)

"Methane emissions from the East Siberian Arctic Shelf"

Now: Ph.D. student, Max Planck Institute for Biogeochemistry

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Jovan Tadic

Jovan Tadic (Postdoctoral Researcher 2013-2015, Research Associate 2015-2016)

Now: Project Scientist, Climate & Ecosystems Division, Earth & Environmental Sciences Area, Lawrence Berkeley National Laboratory

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Chao Li

Chao Li (Postdoctoral Researcher 2013-2016, Barbara McClintock Fellow 2015)

Now: Research Associate, Pacific Climate Impacts Consortium, University of Victoria

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Nils Hase

Nils Hase (Visiting Researcher 2015)

"Sparse reconstruction for large scale atmospheric inverse problems"

Now: Ph.D. student, Center for Industrial Mathematics, University of Bremen

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Yuntao Zhou

Yuntao Zhou (Ph.D. 2013, Postdoctoral Researcher 2013-2015)

"Improved Estimates of the Spatial Distribution and Temporal Trends of Water Quality Parameters Using Geostatistical Data Fusion Methods"

Now: ‎Associate Professor, College of the Environment and Ecology, Xiamen University

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Vineet Yadav

Vineet Yadav (Postdoctoral Researcher 2008-2011, Senior Research Associate 2011-2014)

Now: ‎Research Technologist, Science Data Understanding group, NASA's Jet Propulsion Laboratory

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Jakob Zscheischler

Jakob Zscheischler (Visiting Researcher 2013)

"Impact of Large-Scale Climate Extremes on Biospheric Carbon Fluxes"

Now: Postdoctoral Researcher, Institute for Atmospheric and Climate Science, Swiss Federal Institute of Technology (ETH) Zurich

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Dan Obenour

Dan Obenour (Ph.D. 2013, EPA STAR Fellow, UM Water Center Research Fellow)

"Assessing the Causes and Severity of Gulf of Mexico Hypoxia Using Geostatistical and Mechanistic Modeling" 

Now: Assistant professor, Department of Civil, Construction, & Environmental Engineering, North Carolina State University

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Abhishek Chatterjee

Abhishek Chatterjee (Ph.D. 2012, NASA Earth & Space Science Fellow, NOAA Climate & Global Change Fellow)

"Data Assimilation for Atmospheric CO2: Towards Improved Estimates of CO2 Concentrations and Fluxes"

Now: Scientist III, NASA Goddard Space Flight Center Global Modeling and Assimilation Office (GMAO)

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Dorit Hammerling

Dorit Hammerling (Ph.D. 2012, SAMSI Postdoctoral Fellow)

"Global Atmospheric CO2 Distributions from Satellite Observations"

Now: Associate Professor, Applied Mathematics and Statistics, Colorado School of Mines

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Sharon Gourdji

Sharon Gourdji (Ph.D. 2011, NASA Earth and Space Science Fellow,  NEXUS Fullbright Scholar)

"Improved Estimates of Regional-scale Land-Atmosphere CO2 Exchange Using Geostatistical Atmospheric Inverse Models" 

Now: Crop and Livestock Modelling Scientist, Decision and Policy Analysis Program, International Center for Tropical Agriculture (CIAT); Environmental Engineer, National Institute of Standards and Technology (NIST) Greenhouse Gas and Climate Science Measurements Program

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Deborah Huntzinger

Deborah Huntzinger (Postdoctoral Researcher 2008-2011)

Now: Associate professor of climate sciences, Northern Arizona University

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Kim Mueller

Kim Mueller (Ph.D. 2011, NSF IGERT Fellow, AMS/UCAR Congressional Science Fellow)

"A Data-Driven Multi-Scale Statistical Investigation of Regional Sources and Sinks to Improve Knowledge of Terrestrial Carbon Cycling" 

Now: Environmental Engineer, National Institute of Standards and Technology (NIST) Greenhouse Gas and Climate Science Measurements Program; Visiting Research Faculty, Department of Climate and Space Sciences and Engineering, University of Michigan

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Alanood Alkahed

Alanood Alkhaled (Ph.D. 2009)

"Remote Sensing of CO2: Geostatistical Tools for Assessing Spatial Variability, Quantifying Representation Errors, and Gap-Filling"

Now: Assistant professor, Kuwait University

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Shahar Shlomi

Shahar Shlomi (Ph.D. 2009)

"Combining Geostatistical Analysis and Flow-and-Transport Models to Improve Groundwater Contaminant Plume Estimation"

Now: Senior modeling engineer, Gas Technology Institute

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Meng-Ying Li

Meng-Ying Li (Ph.D. 2008)

"The M-Scale Model: A Multi-Scale Model for Decision Support of On-Site Remediation"

Now: Senior system analyst, Taiwan GIS Center

 

 
Alumni (Undergraduate and masters students) listed in order of departure 

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Frank Sedlar

Frank Sedlar (Research Assistant, 2011-2012)

B.S. (2013), Civil Engineering, U. Michigan

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Sophie Christian

Sophie Christian (Research Assistant 2008-2011)

B.S. (2011), Industrial and Operations Engineering, U. Michigan

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Jill Ostrowski

Jill Ostrowski (Research Assistant, 2007-2010)

B.S. (2007), M.S. (2010), Civil and Environmental Engineering, U. Michigan

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David Sena

David Sena (Research Assistant, 2009-2010)

M.S. (2010), School of Natural Resources and Environmental, U. Michigan

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Christopher Baik

Christopher Baik (Research Assistant, 2008-2009)

B.S. (2012), Computer Science and Engineering, U. Michigan

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Landon Smith

Landon Smith (Research Assistant, 2008-2009)

B.S. (2011), Computer Science, U. Michigan

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Miranda (Katie) Malkin

Miranda (Katie) Malkin (Research Assistant, 2005)

B.S. (2008), Political Science and Government, U. Michigan

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Charles Humphriss (Research Assistant, 2005)

B.S. (2006), Civil and Environmental Engineering, U. Michigan

 

 

Publications

MICHALAK LAB PUBLICATION LIST

Journal Papers (bold names denote Michalak lab authors,  denotes open access papers)

Click on citation to link to the paper. 

Last Updated 9/02/2020

  1. Stough, N., N. Cressie, E.L. Kang, A.M. Michalak, K. Sahr (2020) "Spatial analysis and visualization of global data on multi‑resolution hexagonal grids," Japanese Journal of Statistics and Data Science 3:107–128, doi.org/10.1007/s42081-020-00077-w.
  2. Schwalm, C.R., D.N. Huntinzger, A.M. Michalak, K. Schaefer, J.B. Fisher, Y. Fang, Y. Wei (2020) "Modeling suggests fossil fuel emissions have been driving increased land carbon uptake since the turn of the 20th Century," Scientific Reports, 10 (9059), doi:10.1038/s41598-020-66103-9. 
  3. Huntzinger, D.N., K. Schaefer, C. Schwalm, J.B. Fisher, D. Hayes, E. Stofferahn, J. Carey, A.M. Michalak, Y. Wei, A.K. Jain, H. Kolus, J. Mao, B. Poulter, X. Shi, J. Tang, H. Tian (2020) "Evaluation of simulated soil carbon dynamics in Arctic-Boreal ecosystems," Environmental Research Letters, 15, 025005, doi:10.1088/1748-9326/ab6784.
  4. Randazzo, N.A., A.M. Michalak, A.R. Desai (2020) "Synoptic Meteorology Explains Temperate Forest Carbon Uptake," Journal of Geophysical Research: Biogeosciences, 125 (2), doi:10.1029/2019JG005476.
  5. Miller, S.M., A.M. Michalak (2020) "The impact of improved satellite retrievals on estimates of biospheric carbon balance," Atmospheric Chemistry and Physics, 20 (1), 323–331, doi:10.5194/acp-20-323-2020.
  6. Ho, J.C., A.M. Michalak (2019) "Exploring temperature and precipitation impacts on harmful algal blooms across continental U.S. lakes," Limnology and Oceanography, 9999, 1-18, doi: 10.1002/lno.11365.
  7. Rayner, P.J. , A.M. Michalak, F. Chevallier (2019) "Fundamentals of data assimilation applied to biogeochemistry," Atmospheric Chemistry and Physics, 19, 13911–13932, doi:10.5194/acp-19-13911-2019.
  8. Schwalm, C.R., K. Schaefer, J.B. Fisher, D. Huntzinger, Y. Elshorbany, Y. Fang, D. Hayes, E. Jafarov, A.M. Michalak, M. Piper, E. Stofferahn, K. Wang, Y. Wei (2019) "Divergence in land surface modeling: linking spread to structure," Environmental Research Communications, 1, 111004, doi:10.1088/2515-7620/ab4a8a. 
  9. Ho, J.C., A.M. Michalak, N. Pahlevan (2019) "Widespread global increase in intense lake phytoplankton blooms since the 1980s," Nature, 574, 667–670, doi:10.1038/s41586-019-1648-7. SharedIt 
  10. El Masri, B., C. Schwalm, D.N. Huntzinger, J. Mao, X. Shi, C. Peng, J.B. Fisher, A.K. Jain, H. Tian, B. Poulter, A.M. Michalak (2019) "Carbon and Water Use Efficiencies: A Comparative Analysis of Ten Terrestrial Ecosystem Models under Changing Climate," Scientific Reports, 9, 14680, doi:10.1038/s41598-019-50808-7. 
  11. Liu,Y., S. Piao, T. Gasser, P. Ciais, H. Yang, H. Wang, T.F. Keenan, M. Huang, S. Wan, J. Song, K. Wang, I.A. Janssens, J. Peñuelas, C. Huntingford, X. Wang, M.A. Arain, Y. Fang, J.B. Fisher, M. Huang, D.N. Huntzinger, A. Ito, A.K. Jain, J. Mao, A.M. Michalak, C.Peng, B. Poulter, C. Schwalm, X. Shi, H. Tian, Y. Wei, N. Zeng, Q. Zhu, T. Wang (2019) "Field-experiment constraints on the enhancement of the terrestrial carbon sink by CO2 fertilization," Nature Geoscience, 12, 809-814, doi:10.1038/s41561-019-0436-1.
  12. Ballard, T.C., A.M. Michalak, G.F. McIsaac, N.N. Rabalais, R.E. Turner (2019) "Comment on "Legacy nitrogen may prevent achievement of water quality goals in the Gulf of Mexico"," Science, 365 (6455), eaau8401, doi:10.1126/science.aau840.
  13. Hu, L., A.E. Andrews, K.W. Thoning, C. Sweeney, J.B. Miller, A.M. Michalak, E. Dlugokencky, P.P. Tans, Y.P. Shiga, M. Mountain, T. Nehrkorn, S.A. Montzka, K. McKain, J. Kofler, M. Trudeau, S.E. Michel, S.C. Biraud, M.L. Fischer, D.E.J. Worthy, B.H. Vaughn, J.W.C. White, V. Yadav, S. Basu, I.R. van der Velde (2019) "Enhanced North American carbon uptake associated with El Niño," Science Advances, 5 (6), eaaw0076, doi:10.1126/sciadv.aaw0076.
  14. Ryoo, J., L.T. Iraci, T. Tanaka, J.E. Marrero, E.L. Yates, I. Fung, A.M. Michalak, J. Tadic, W. Gore, T.P. Bui, J.M. Dean-Day, C.S. Chang (2019) "Quantification of CO2 and CH4 emissions over Sacramento, California, based on divergence theorem using aircraft measurements,"Atmospheric Measurement Techniques, 12, 2949-2966, doi:10.5194/amt-12-2949-2019
  15. Cui, E., K. Huang, M.A. Arain, J.B. Fisher, D.N. Huntzinger, A. Ito, Y. Luo, A.K. Jain, J. Mao, A.M. Michalak, S. Niu, N.C. Parazoo, C. Peng, S. Peng, B. Poulter, D.M. Ricciuto, K.M. Schaefer, C.R. Schwalm, X. Shi, H. Tian, W. Wang, J. Wang, Y. Wei, E. Yan, L. Yan, N. Zeng, Q. Zhu, J. Xia (2019) "Vegetation Functional Properties Determine Uncertainty of Simulated Ecosystem Productivity: A Traceability Analysis in the East Asian Monsoon Region," Global Biogeochemical Cycles, 33 (6), 668-689, doi:10.1029/2018GB005909.
  16. Ballard, T.C., E. Sinha, A. M. Michalak (2019) "Long-Term Changes in Precipitation and Temperature Have Already Impacted Nitrogen Loading," Environmental Science and Technology, 53, 5080-5090, doi:10.1021/acs.est.8b06898.
  17. Sinha, E., A.M. Michalak, K.V. Calvin, P.J. Lawrence (2019) "Societal decisions about climate mitigation will have dramatic impacts on eutrophication in the 21st century," Nature Communications, 10 (939), doi:10.1038/s41467-019-08884-w.
  18. Kolus, H.R., D.N. Huntzinger, C.R. Schwalm, J.B. Fisher, N. McKay, Y. Fang, A.M. Michalak, K. Schaefer, Y. Wei, B. Poulter, J. Mao, N.C. Parazoo, X. Shi (2019) "Land carbon models underestimate the severity and duration of drought’s impact on plant productivity," Scientific Reports, 9 (2758), doi:10.1038/s41598-019-39373-1.
  19. Miller, S.M., A.M. Michalak, R.G. Detmers, O.P. Hasekamp, L.M.P. Bruhwiler, S. Schwietzke (2019) "China’s coal mine methane regulations have not curbed growing emissions," Nature Communications, 10 (303), doi:10.1038/s41467-018-07891.
  20. Huang K., J. Xia, Y. Wang, A. Ahlström, J. Chen, R.B. Cook, E. Cui, Y. Fang, J.B. Fisher, D.N. Huntzinger, Z. Li, A.M. Michalak, Y. Qiao, K. Schaefer, C. Schwalm, J. Wang, Y. Wei, X. Xu, L. Yan, C. Bian, Y. Luo (2018) "Enhanced peak growth of global vegetation and its key mechanisms," Nature Ecology & Evolution, 2, 1897–1905, doi:10.1038/s41559-018-0714-0.
  21. Touma D., A.M. Michalak , D.L. Swain, N.S. Diffenbaugh (2018) "Characterizing the Spatial Scales of Extreme Daily Precipitation in the United States," Journal of Climate, 31, 8023-8037, doi:10.1175/JCLI-D-18-0019.1.
  22. Shiga, Y.P., A.M. Michalak, Y. Fang, K. Schaefer, A.E. Andrews, D.H. Huntzinger, C.R. Schwalm, K. Thoning, Y. Wei (2018) "Forests dominate the interannual variability of the North American carbon sink," Environmental Research Letters, 13 (8), 084015, doi:10.1088/1748-9326/aad505.
  23. Jeong, S, A.A. Bloom, D. Schimel, C. Sweeney, N.C. Parazoo, D. Medvigy, G. Schaepman-Strub, C. Zheng, C.R. Schwalm, D.N. Huntzinger, A.M. Michalak, C.E. Miller (2018) "Accelerating rates of Arctic carbon cycling revealed by long-term atmospheric CO2measurements," Science Advances, 4 (7), eaao1167, doi:10.1126/sciadv.aao1167.
  24. Del Giudice, D., R.L. Muenich, M.M. Kalcic, N.S. Bosch, D. Scavia, A.M. Michalak (2018) "On the practical usefulness of least squares for assessing uncertainty in hydrologic and water quality predictions," Environmental Modelling & Software, 105, 286-295, doi:10.1016/j.envsoft.2018.03.009.
  25. Miller, S.M., A.M. Michalak , V. Yadav, J.M. Tadić (2018) "Characterizing biospheric carbon balance using CO2 observations from the OCO-2 satellite," Atmospheric Chemistry and Physics, 18 (9), 6785-6799, doi:10.5194/acp-18-6785-2018.
  26. Shiga, Y.P., J.M. Tadić, X. Qiu, V. Yadav, A.E. Andrews, J.A. Berry, A.M. Michalak (2018) "Atmospheric CO2 observations reveal strong correlation between regional net biospheric carbon uptake and solar-induced chlorophyll fluorescence," Geophysical Research Letters, 45 (2), 1122-1132, doi:10.1002/2017GL076630.
  27. Li, C., Y. Fang, K. Caldeira, X. Zhang, N.S. Diffenbaugh, A.M. Michalak (2018) "Widespread persistent changes to temperature extremes occurred earlier than predicted," Scientific Reports, 8 (1007), doi:10.1038/s41598-018-19288-z.
  28. Del Giudice, D., Y. Zhou, E. Sinha, A.M. Michalak (2018) "Long-Term phosphorus loading and springtime temperatures explain interannual variability of hypoxia in a large temperate lake," Environmental Science & Technology, 52 (4), 2046–2054, doi:10.1021/acs.est.7b04730.
  29. Zhou, S., B. Yu, C.R. Schwalm, P. Ciais, Y. Zhang, J.B. Fisher, A.M. Michalak, W. Wang, B. Poulter, D.N. Huntzinger, S. Niu, J. Mao, A. Jain, D.M. Ricciuto, X. Shi, A. Ito, Y. Wei, Y. Huang, G. Wang (2017) "Response of water use efficiency to global environmental change based on output from terrestrial biosphere models," Global Biogeochemical Cycles, 31 (11), 1639-1655, doi:10.1002/2017GB005733.
  30. Li, C., X. Zhang, F. Zwiers, Y. Fang, A.M. Michalak (2017) "Recent very hot summers in northern hemispheric land areas measured by wet bulb globe temperature will be the norm within 20 years," Earth's Future, 5 (12), 1203-1216, doi:10.1002/2017EF000639.
  31. Zheng, Y., N. Unger, J.M. Tadić, R. Seco, A.B. Guenther, M.P. Barkley, M.J. Potosnak, L.T. Murray, A.M. Michalak, X. Qiu, S. Kim, T. Karl, L. Gu, S.G. Pallardy (2017) "Drought impacts on photosynthesis, isoprene emission and atmospheric formaldehyde in a mid-latitude forest," Atmospheric Environment, 167, 190-201, doi:10.1016/j.atmosenv.2017.08.017.
  32. Schwalm, C.R., W.R.L. Anderegg, A.M. Michalak, J.B. Fisher, F. Biondi, G. Koch, M. Litvak, K. Ogle, J.D. Shaw, A. Wolf, D.N. Huntzinger, K. Schaefer, R. Cook, Y. Wei, Y. Fang, D. Hayes, M. Huang, A. Jain, H. Tian (2017) "Global patterns of drought recovery," Nature, 548 (7666), 202–205, doi:10.1038/nature23021
  33. Sinha, E., A.M. Michalak, V. Balaji (2017) "Eutrophication will increase during the 21st century as a result of precipitation changes," Science, 357 (6349), 405-408, doi:10.1126/science.aan2409.
  34. Tadić, J.M., A.M. Michalak, L. Iraci, V. Ilić, S.C. Biraud, D.R. Feldman, T. Bui, M.S. Johnson, M. Loewenstein, S. Jeong, M.L. Fischer, E.L. Yates, J. Ryoo (2017) "Elliptic cylinder airborne sampling and geostatistical mass balance approach for quantifying local greenhouse gas emissions," Environmental Science & Technology, 51 (17), 10012–10021, doi:10.1021/acs.est.7b03100.
  35. Kim, J., J. Kug, S. Jeong, D.N. Huntzinger, A.M. Michalak, C.R. Schwalm, Y. Wei, K. Schaefer (2017) "Reduced North American terrestrial primary productivity linked to anomalous Arctic warming," Nature Geoscience, 10 (8), 572–576, doi:10.1038/ngeo2986.
  36. Huntzinger, D.N., A.M. Michalak, C. Schwalm, P. Ciais, A.W. King, Y. Fang, K. Schaefer, Y. Wei, R.B. Cook, J.B. Fisher, D. Hayes, M. Huang, A. Ito, A. K. Jain, H. Lei, C. Lu, F. Maignan, J. Mao, N. Parazoo, S. Peng, B. Poulter, D. Ricciuto, X. Shi, H. Tian, W. Wang, N. Zeng, F. Zhao (2017) "Uncertainty in the response of terrestrial carbon sink to environmental drivers undermines carbon-climate feedback predictions," Scientific Reports, 7 (4765), doi:10.1038/s41598-017-03818-2.
  37. Michalak, A.M., N.A. Randazzo, F. Chevallier (2017) "Diagnostic methods for atmospheric inversions of long-lived greenhouse gases," Atmospheric Chemistry and Physics, 17 (12), 7405-7421, doi:10.5194/acp-17-7405-2017.
  38. Fang, Y., A.M. Michalak, C.R. Schwalm, D.N. Huntzinger, J.A. Berry, P. Ciais, S. Piao, B. Poulter, J.B. Fisher, R.B. Cook, D. Hayes, M. Huang, A. Ito, A. Jain, H. Lei, C. Lu, J. Mao, N.C. Parazoo, S. Peng, D.M. Ricciuto, X. Shi, B. Tao, H. Tian, W. Wang, Y. Wei, J. Yang (2017) "Global land carbon sink response to temperature and precipitation varies with ENSO phase," Environmental Research Letters, 12 (6), 064007, doi:10.1088/1748-9326/aa6e8e. 
  39. Ho, J.C., A.M. Michalak (2017) "Phytoplankton blooms in Lake Erie impacted by both long-term and springtime phosphorus loading," Journal of Great Lakes Research, 43 (3), 221-228, doi:10.1016/j.jglr.2017.04.001.
  40. Miller, S.M., A.M. Michalak (2017) "Constraining sector-specific CO2 and CH4 emissions in the US," Atmospheric Chemistry and Physics, 17 (6), 3963-3985, doi:10.5194/acp-17-3963-2017.
  41. Michalak, A.M. (2017) "Troubled waters on the Great Lakes," Nature, 543 (7646), 488-489, doi:10.1038/543488a.
  42. Tadić, J.M., X. Qiu, S. Miller, A.M. Michalak (2017) "Spatio-temporal approach to moving window block kriging of satellite data v1.0," Geoscientific Model Development, 10, 709-720, doi:10.5194/gmd-10-709-2017.
  43. Ho, J.C., R.P. Stumpf, T.B. Bridgeman, A.M. Michalak (2017) "Using Landsat to extend the historical record of lacustrine phytoplankton blooms: A Lake Erie case study," Remote Sensing of Environment, 191, 273-285, doi:10.1016/j.rse.2016.12.013.
  44. Houweling, S., P. Bergamaschi, F. Chevallier, M. Heimann, T. Kaminski, M. Krol, A.M. Michalak, P. Patra (2017) "Global inverse modeling of CH4 sources and sinks: an overview of methods," Atmospheric Chemistry and Physics, 17 (1), 235-256, doi:10.5194/acp-17-235-2017.
  45. Sinha, E., A.M. Michalak (2016) "Precipitation Dominates Interannual Variability of Riverine Nitrogen Loading across the Continental United States," Environmental Science & Technology, 50 (23), 12874-12884, doi:10.1021/acs.est.6b04455.
  46. Thomas, R.T., I.C. Prentice, H. Graven, P. Ciais, J.B. Fisher, D.J. Hayes, M. Huang, D.N. Huntzinger, A. Ito, A. Jain, J. Mao, A.M. Michalak, S. Peng, B. Poulter, D.M. Ricciuto, X. Shi, C. Schwalm, H. Tian, N. Zeng (2016) "Increased light-use efficiency in northern terrestrial ecosystems indicated by CO2 and greening observations," Geophysical Research Letters, 43 (21), 11339-11349, doi:10.1002/2016GL070710.
  47. Yadav, V., A.M. Michalak, J. Ray, Y.P. Shiga (2016) "A statistical approach for isolating fossil fuel emissions in atmospheric inverse problems," Journal of Geophysical Research: Atmospheres, 121 (20), 12490-12504, doi:10.1002/2016JD025642.
  48. Miller, S.M., C.E. Miller, R. Commane, R.Y.-W. Chang, S.J. Dinardo, J.M. Henderson, A. Karion, J. Lindaas, J.R. Melton, J.B. Miller, C. Sweeney, S.C. Wofsy, A.M. Michalak (2016) "A multiyear estimate of methane fluxes in Alaska from CARVE atmospheric observations," Global Biogeochemical Cycles, 30 (10), 1441-1453, doi:10.1002/2016GB005419.
  49. Michalak, A.M. (2016) "Study role of climate change in extreme threats to water quality," Nature, 535 (7612), 349-350, doi:10.1038/535349a.
  50. Shao, J., X. Zhou, Y. Luo, G. Zhang, W. Yan, J. Li, B. Li, L. Dan, J.B. Fisher, Z. Gao, Y. He, D. Huntzinger, A.K. Jain, J. Mao, J. Meng, A.M. Michalak, N.C. Parazoo, C. Peng, B. Poulter, C.R. Schwalm, X. Shi, R. Sun, F. Tao, H. Tian, Y. Wei, N. Zeng, Q. Zhu, W. Zhu (2016) "Uncertainty analysis of terrestrial net primary productivity and net biome productivity in China during 1901-2005," Journal of Geophysical Research Biogeosciences, 121 (5), 1372-1393, doi:10.1002/2015JG003062.
  51. Ito, A., M. Inatomi, D.N. Huntzinger, C. Schwalm, A.M. Michalak, R. Cook, A.W. King, J. Mao, Y. Wei, W. Mac Post, W. Wang, M. Altaf Arain, S. Huang, D.J. Hayes, D.M. Ricciuto, X. Shi, M. Huang, H. Lei, H. Tian, C. Lu, J. Yang, B. Tao, A. Jain, B. Poulter, S. Peng, P. Ciais, J.B. Fisher, N. Parazoo, K. Schaefer, C. Peng, N. Zeng, F. Zhao (2016) "Decadal trends in the seasonal-cycle amplitude of terrestrial CO2 exchange resulting from the ensemble of terrestrial biosphere models," Tellus B, 68 (1), 28968, doi:10.3402/tellusb.v68.28968.
  52. Bullerjahn, G.S., R.M. McKay, T.W. Davis, D.B. Baker, G.L. Boyer, L.V. D’Anglada, G.J. Doucette, J.C. Ho, E.G. Irwin, C.L. Kling, R.M. Kudela, R. Kurmayer, A.M. Michalak, J.D. Ortiz, T.G. Otten, H.W. Paerl, B. Qin, B.L. Sohngen, R.P. Stumpf, P.M. Visser, S.W. Wilhelms (2016) "Global solutions to regional problems: Collecting global expertise to address the problem of harmful cyanobacterial blooms. A Lake Erie case study," Harmful Algae, 54, 223-238, doi:10.1016/j.hal.2016.01.003.
  53. Alden, C.B., J.B. Miller, L.V. Gatti, M.M. Gloor, K. Guan, A.M. Michalak, I.T. van der Laan-Luijkx, D. Touma, A. Andrews, L.S. Basso, C.S.C. Correia, L.G. Domingues, J. Joiner, M.C. Krol, A.I. Lyapustin, W. Peters, Y.P. Shiga, K. Thoning, I.R. van der Velde, T.T. van Leeuwen, V. Yadav, N.S. Diffenbaugh (2016) "Regional atmospheric CO2 inversion reveals seasonal and geographic differences in Amazon net biome exchange," Global Change Biology, 22 (10), 3427-3443, doi:10.1111/gcb.13305.
  54. Tian, H., C. Lu, P. Ciais, A.M. Michalak, J.G. Canadell, E. Saikawa, D.N. Huntzinger, K.R. Gurney, S. Sitch, B. Zhang, J. Yang, P. Bousquet, L. Bruhwiler, G. Chen, E. Dlugokencky, P. Friedlingstein, J. Melillo, S. Pan, B. Poulter, R. Prinn, M. Saunois, C.R. Schwalm, S.C. Wofsy (2016) "The terrestrial biosphere as a net source of greenhouse gases to the atmosphere," Nature, 531 (7593), 225–228, doi:10.1038/nature16946.
  55. Tadić, J.M., A.M. Michalak (2016) "On the effect of spatial variability and support on validation of remote sensing observations of CO2," Atmospheric Environment, 132, 309-316, doi:10.1016/j.atmosenv.2016.03.014.
  56. Miller, S.M., R. Commane, J.R. Melton, A.E. Andrews, J. Benmergui, E.J. Dlugokencky, G. Janssens-Maenhout, A.M. Michalak, , C. Sweeney, D.E.J. Worthy (2016) "Evaluation of wetland methane emissions across North America using atmospheric data and inverse modeling," Biogeosciences, 13 (4), 1329-1339, doi:10.5194/bg-13-1329-2016.
  57. Tadić, J.M., X. Qiu, V. Yadav, A.M. Michalak (2015) "Mapping of satellite Earth observations using moving window block kriging", Geoscientific Model Development, 8, 3311-3319, doi:10.5194/gmd-8-3311-2015.
  58. Rajaram, H., J.M. Bahr, G. Blöschl, X. Cai, D. Scott Mackay, A.M. Michalak, A. Montanari, X. Sanchez-Villa, G. Sander (2015) "A reflection on the first 50 years of Water Resources Research," Water Resources Research, 51 (10), 7829–7837, doi:10.1002/2015WR018089.
  59. Mao, J., W. Fu, X. Shi, D.M. Ricciuto, J.B. Fisher, R.E. Dickinson, Y. Wei, W. Shem, S. Piao, K. Wang, C.R. Schwalm, H. Tian, M. Mu, A. Arain, P. Ciais, R. Cook, Y. Dai, D. Hayes, F.M. Hoffman, M. Huang, S. Huang, D.N. Huntzinger, A. Ito, A. Jain, A.W. King, H. Lei, C. Lu, A.M. Michalak, N. Parazoo, C. Peng, S. Peng, B. Poulter, K. Schaefer, E. Jafarov, P.E. Thornton, W. Wang, N. Zeng, Z. Zeng, F. Zhao, Q. Zhu, Z. Zhu (2015) "Disentangling climatic and anthropogenic controls on global terrestrial evapotranspiration trends," Environmental Research Letters, 10 (9), 094008, doi:10.1088/1748-9326/10/9/094008. 
  60. Montanari, A., J. Bahr, G. Blöschl, X. Cai, D.S. Mackay, A.M. Michalak, H. Rajaram, G. Sander (2015) "50 years of water resources research legacy and perspectives for the science of hydrology introduction," Water Resources Research, 51 (9), 6797–6803, doi:10.1002/ 2015WR017998.
  61. Michalak, A.M., C.B. Field (2015) "Introduction," Daedalus Journal of the American Academy of Arts & Sciences, Summer 2015: On Water, 5-6, doi:10.1162/DAED_x_00336.
  62. Field, C.B., A.M. Michalak (2015) "Water, Climate, Energy, Food: Inseparable & Indispensable," Daedalus Journal of the American Academy of Arts & Sciences, Summer 2015: On Water, 7-17, doi:10.1162/DAED_x_00337.
  63. Schwalm, C.R., D.N. Huntzinger, J.B. Fisher, A.M. Michalak, K. Bowman, P. Ciais, R. Cook, B. El-Masri, D. Hayes, M. Huang, A. Ito, A. Jain, A.W. King, H. Lei, J. Liu, C. Lu, J. Mao, S. Peng, B. Poulter, D. Ricciuto, K. Schaefer, X. Shi, B. Tao, H. Tian, W. Wang, Y. Wei, J. Yang, N. Zeng (2015) "Toward “optimal” integration of terrestrial biosphere models," Geophysical Research Letters, 42 (11), 4418–4428. doi:10.1002/2015GL064002.
  64. Tian, H., C. Lu, J. Yang, K. Banger, D.N. Huntzinger, C.R. Schwalm, A.M. Michalak, R. Cook, P. Ciais, D. Hayes, M. Huang, A. Ito, A.K. Jain, H. Lei, J. Mao, S. Pan, W.M. Post, S. Peng, B. Poulter, W. Ren, D. Ricciuto, K. Schaefer, X. Shi, B. Tao, W. Wang, Y. Wei, Q. Yang, B. Zhang, N. Zeng (2015) "Global patterns and controls of soil organic carbon dynamics as simulated by multiple terrestrial biosphere models: Current status and future directions," Global Biogeochemical Cycles, 29 (6), 775–792, doi:10.1002/2014GB005021.
  65. Fang, Y., A.M. Michalak (2015) "Atmospheric observations inform CO2 flux responses to enviroclimatic drivers," Global Biogeochemical Cycles, 29 (5), 555-566, doi:10.1002/2014GB005034.
  66. Ray, J., J. Lee, V. Yadav, S. Lefantzi, A.M. Michalak, B. van Bloemen Waanders, S. A. McKenna (2015) “A sparse reconstruction method for the estimation of multi-resolution emission fields via atmospheric inversion”, Geoscientific Model Development, 8, 1259-1273, doi:10.5194/gmd-8-1259-2015.
  67. Hammerling, D.M., S.R. Kawa, K. Schaefer, S. Doney, A.M. Michalak (2015) "Detectability of CO2 flux signals by a space-based lidar mission," Journal of Geophysical Research – Atmospheres, 120 (5), 1794-1807, doi:10.1002/2014JD022483.
  68. Obenour, D.R., A.M. Michalak, D. Scavia (2015) "Assessing biophysical controls on Gulf of Mexico hypoxia through probabilistic modeling," Ecological Applications, 25 (2), 492-505, doi:10.1890/13-2257.1.
  69. Ho, J.C., A.M. Michalak (2015) "Challenges in tracking harmful algal blooms: A synthesis of evidence from Lake Erie," Journal of Great Lakes Research, 41 (2), 317-325, doi:10.1016/j.jglr.2015.01.001.
  70. Zhou, Y., A.M. Michalak, D. Beletsky, Y.R. Rao, R.P. Richards (2015) "Record-Breaking Lake Erie Hypoxia during 2012 Drought," Environmental Science & Technology, 49 (2), 800-807, doi:10.1021/es503981n.
  71. Fang, Y., A.M. Michalak, Y.P. Shiga, V. Yadav (2014) "Using atmospheric observations to evaluate the spatiotemporal variability of CO2 fluxes simulated by terrestrial biospheric models," Biogeosciences, 11 (23), 6985-6997, doi:10.5194/bg-11-6985-2014.
  72. Li, C., E. Sinha, D.E. Horton, N.S. Diffenbaugh, A.M. Michalak (2014) "Joint bias correction of temperature and precipitation in climate model simulations," Journal of Geophysical Research – Atmospheres, 119 (23), 13153-13162, doi:10.1002/2014JD022514.
  73. Wei, Y., S. Liu, D.N. Huntzinger, A.M. Michalak, N. Viovy, W.M. Post, C.R. Schwalm, K. Schaefer, A.R. Jacobson, C. Lu, H. Tian, D.M. Ricciuto, R.B. Cook, J. Mao, X. Shi (2014) "The North American Carbon Program Multi-scale Synthesis and Terrestrial Model Intercomparison Project: Part 2 - Environmental Driver Data," Geoscientific Model Development, 7, 2875-2893, doi:10.5194/gmd-7-2875-2014.
  74. Ray, J., V. Yadav, A.M. Michalak, B. van Bloemen Waanders, S. A. McKenna (2014) “A multiresolution spatial parameterization for the estimation of fossil-fuel carbon dioxide emissions via atmospheric inversions”, Geoscientific Model Development, 7, 1901-1918, doi:10.5194/gmd-7-1901-2014.
  75. Shiga, Y.P. , A.M. Michalak, S.M. Gourdji, K.L. Mueller, V. Yadav (2014) "Detecting fossil fuel emissions patterns from subcontinental regions using North American in situ CO2measurements," Geophysical Research Letters, 41 (12), 4381-4388, doi:10.1002/2014GL059684.
  76. Zscheischler, J., A.M. Michalak, C. Schwalm, M.D. Mahecha, D.N. Huntzinger, M. Reichstein, G. Berthier, P. Ciais, R.B. Cook, B. El-Masri, M. Huang, A. Ito, A. Jain, A. King, H. Lei, C. Lu, J. Mao, S. Peng, B. Poulter, D. Ricciuto, X. Shi, B. Tao, H. Tian, N. Viovy, W. Wang, Y. Wei, J. Yang, N. Zeng (2014) "Impact of large-scale climate extremes on biospheric carbon fluxes: An intercomparison based on MsTMIP data," Global Biogeochemical Cycles, 28 (6), 585-600, doi:10.1002/2014GB004826.
  77. Miller S.M., A.M. Michalak, S.C. Wofsy (2014) “Reply to Hristov et al.: Linking methane emissions inventories with atmospheric observations”, Proceedings of the National Academy of Sciences, 111 (14), E1321, doi: 10.1073/pnas.1401703111.
  78. Scavia, D., J.D. Allan, K.K. Arend, S. Bartell, D. Beletsky, N.S. Bosch, S.B. Brandt, R.D. Briland, I. Daloğlu, J.V. DePinto, D.M. Dolan, M.A. Evans, T.M. Farmer, D. Goto, H. Han, T.O. Höök, R. Knight, S.A. Ludsin, D. Mason, A.M. Michalak, R.P. Richards, J.J. Roberts, D.K. Rucinski, E. Rutherford, D.J. Schwab, T. Sesterhenn, H. Zhang, Y. Zhou (2014) "Assessing and addressing the re-eutrophication of Lake Erie: Central basin hypoxia," Journal of Great Lakes Research, 40 (2), 226-246, 10.1016/j.jglr.2014.02.004.
  79. Miller, S.M., D.E.J. Worthy, A.M. Michalak, S.C. Wofsy, E.A. Kort, T.C. Havice, A.E. Andrews, E.J. Dlugokencky, J.O. Kaplan, P.J. Levi, H. Tian, B. Zhang (2014) "Observational constraints on the distribution, seasonality, and environmental predictors of North American boreal methane emissions," Global Biogeochemical Cycles, 28 (2), 146-160, doi:10.1002/2013GB004580.
  80. Miller, S.M., A.M. Michalak, P.J. Levi (2014) “Atmospheric inverse modeling with known physical bounds: an example from trace gas emissions”, Geoscientific Model Development, 7, 303-315, doi:10.5194/gmd-7-303-2014.
  81. Zhou, Y., D. Scavia, A.M. Michalak (2014) "Nutrient loading and meteorological conditions explain interannual variability of hypoxia in Chesapeake Bay," Limnology & Oceanography, 59 (2), 373-384, doi:10.4319/lo.2014.59.2.0373.
  82. Huntzinger, D.N., C. Schwalm, A.M. Michalak, K. Schaefer, A.W. King, Y. Wei, A. Jacobson, S. Liu, R.B. Cook, W.M. Post, G. Berthier, D. Hayes, M. Huang, A. Ito, H. Lei, C. Lu, J. Mao, C.H. Peng, S. Peng, B. Poulter, D. Riccuito, X. Shi, H. Tian, W. Wang, N. Zeng, F. Zhao, Q. Zhu (2013) "The North American Carbon Program Multi-Scale Synthesis and Terrestrial Model Intercomparison Project – Part 1: Overview and experimental design," Geoscientific Model Development, 6, 2121-2133, doi:10.5194/gmd-6-2121-2013.
  83. Montanari, A., G. Blöschl, X. Cai, D.S. Mackay, A.M. Michalak, H. Rajaram, G. Sander (2013) “Editorial: Toward 50 years of Water Resources Research”, Water Resources Research, 49 (12), 7841-7842, doi:10.1002/2013WR014986.
  84. Chatterjee, A., A.M. Michalak (2013) “Technical Note: Comparison of ensemble Kalman filter and variational approaches for CO2 data assimilation”, Atmospheric Chemistry and Physics, 13 (23), 11643-11660, doi:10.5194/acp-13-11643-2013.
  85. Miller S.M., S.C. Wofsy, A.M. Michalak, E.A. Kort, A.E. Andrews, S.C. Biraud, E.J. Dlugokencky, J. Eluszkiewicz, M.L. Fischer, G. Janssens-Maenhout, B.R. Miller, J.B. Miller, S.A. Montzka, T. Nehrkorn, C. Sweeney (2013) “Anthropogenic emissions of methane in the United States”, Proceedings of the National Academy of Sciences, 110 (50), 20018–20022, doi:10.1073/pnas.1314392110.
  86. Chatterjee, A., R.J. Engelen, S.R. Kawa, C. Sweeney, A.M. Michalak (2013) "Background error covariance estimation for atmospheric CO2 data assimilation," Journal of Geophysical Research – Atmospheres, 118 (17), 10140-10154, doi:10.1002/jgrd.50654.
  87. Obenour, D.R., D. Scavia, N.N. Rabalais, R.E. Turner, A.M. Michalak (2013) "Retrospective Analysis of Midsummer Hypoxic Area and Volume in the Northern Gulf of Mexico, 1985-2011," Environmental Science & Technology, 47 (17), 9808-9815, doi:10.1021/es400983g.
  88. Schwalm, C.R., D.N. Huntinzger, A.M. Michalak, J.B. Fisher, J.S. Kimball, B. Mueller, K. Zhang, Y. Zhang (2013) "Sensitivity of inferred climate model skill to evaluation decisions: a case study using CMIP5 evapotranspiration," Environmental Research Letters, 8 (2), 024028, doi:10.1088/1748-9326/8/2/024028.
  89. Yadav, V., A.M. Michalak (2013) “Improving computational efficiency in large linear inverse problems: an example from carbon dioxide flux estimation”, Geoscientific Model Development, 6, 583-590, doi:10.5194/gmd-6-583-2013.
  90. Michalak, A.M., E.J. Anderson, D. Beletsky, S. Boland, N.S. Bosch, T.B. Bridgeman, J.D. Chaffin, K. Cho, R. Confesor, I. Daloğlu, J.V. DePinto, M.A. Evans, G.L. Fahnenstiel., L. He, J.C. Ho, L. Jenkins, T.H. Johengen, K.C. Kuo, E. LaPorte, X. Liu, M.R. McWilliams, M.R. Moore, D.J. Posselt, R.P. Richards, D. Scavia, A.L. Steiner, E. Verhamme, D.M. Wright, M.A. Zagorski (2013) “Record-setting algal bloom in Lake Erie caused by agricultural and meteorological trends consistent with expected future conditions”, Proceedings of the National Academy of Sciences, 110 (16), 6448-6452, doi:10.1073/pnas.1216006110.
  91. Shiga, Y.P., A.M. Michalak, S.R. Kawa, R.J. Engelen (2013) “In-situ CO2 monitoring network evaluation and design: A criterion based on atmospheric CO2 variability”, Journal of Geophysical Research – Atmospheres, 118 (4), 2007-2018, doi:10.1002/jgrd.50168.
  92. Yadav, V., K.L. Mueller, A.M. Michalak (2013) “A backward elimination discrete optimization algorithm for model selection in spatio-temporal regression models”, Environmental Modelling & Software, 42, 88-98, doi:10.1016/j.envsoft.2012.12.009.
  93. Michalak, A.M. (2013) “Atmospheric observations and inverse modeling approaches for identifying geographical sources and sinks of carbon”, in Land Use and the Carbon Cycle: Advances in Integrated Science, Management, and Policy, edited by D.G. Brown, D.T. Robinson, N.H. French, and B.C. Reed, Cambridge University Press, New York, NY, 144-177.
  94. Zhou, Y., D.R. Obenour, D. Scavia, T.H. Johengen, A.M. Michalak (2013) “Spatial and Temporal Trends in Lake Erie Hypoxia, 1987-2007”, Environmental Science & Technology, 47 (2), 899-905, doi:10.1021/es303401b.
  95. Chatterjee, A., A.M. Michalak, J.L. Anderson, K.L. Mueller, V. Yadav (2012) “Toward reliable ensemble Kalman filter estimates of CO2 fluxes”, Journal of Geophysical Research – Atmospheres, 117 (D22), D22306, doi:10.1029/2012JD018176.
  96. Obenour, D.R., A.M. Michalak, Y. Zhou, D. Scavia (2012) “Quantifying the impacts of stratification and nutrient loading on hypoxia in the Northern Gulf of Mexico”, Environmental Science and Technology, 46 (10), 5489-5496, doi:10.1021/es204481a.
  97. Huntzinger, D.N., W.M Post, Y. Wei, A.M. Michalak, T.O. West, A.R. Jacobson, I.T. Baker, J.M. Chen, K.J. Davis, D.J. Hayes, F.M. Hoffman, A.K. Jain, S. Liu, A.D. McGuire, R.P. Neilson, B. Poulter, H.Q. Tian, P. Thornton, E. Tomelleril, N. Viovy, J. Xiao, N. Zeng, M. Zhao, and R. Cook (2012) “North American Carbon Program (NACP) Regional Interim Synthesis: Terrestrial Biospheric Model Intercomparison”, Ecological Modelling, 232, 144-157, doi:10.1016/j.ecolmodel.2012.02.004.
  98. Hammerling, D.M., A.M. Michalak, C. O’Dell, S.R. Kawa (2012) “Global CO2distributions over land from the Greenhouse Gases Observing Satellite (GOSAT)”, Geophysical Research Letters, 39 (8), L08804, doi:10.1029/2012GL051203.
  99. Miller, S.M., E.A. Kort, A.I. Hirsch, E.J. Dlugokencky, A.E. Andrews, X. Xu, H. Tian, T. Nehrkorn, J. Eluszkiewicz, A.M. Michalak, S.C. Wofsy (2012) “Regional sources of nitrous oxide over the United States: Seasonal variation and spatial distribution”, Journal of Geophysical Research – Atmospheres, 117 (D6), D06310, doi:10.1029/2011JD016951.
  100. Hammerling, D.M., A.M. Michalak, S.R. Kawa (2012) “Mapping of CO2 at high spatiotemporal resolution using satellite observations: Global distributions from OCO-2”, Journal of Geophysical Research – Atmospheres, 117 (D6), D06306, doi:10.1029/2011JD017015.
  101. Gourdji, S.M., K.L. Mueller, V. Yadav, D.N. Huntzinger, A.E. Andrews, M. Trudeau, G. Petron, T. Nehrkorn, J. Eluszkiewicz, J. Henderson, D. Wen, J. Lin, M. Fischer, C. Sweeney, A.M. Michalak (2012) “North American CO2 exchange: Inter-comparison of modeled estimates with results from a fine-scale atmospheric inversion”, Biogeosciences, 9 (1), 457-475, doi:10.5194/bg-9-457-2012.
  102. Vasys, V.N., A.R. Desai, G.A. McKinley, V. Bennington, A.M. Michalak, A.E. Andrews (2011) “The influence of carbon exchange of a large lake on regional tracer-transport inversions: results from Lake Superior”, Environmental Research Letters, 6 (3), 034016, doi:10.1088/1748-9326//6/3/034016
  103. Huntzinger, D.N., S.M. Gourdji, K.L. Mueller, A.M. Michalak (2011) “A systematic approach for comparing modeled biospheric carbon fluxes across regional scales”, Biogeosciences, 8 (6), 1579-1593, doi:10.5194/bg-8-1579-2011.
  104. Bruhwiler, L.M.P., A.M Michalak, and P.P. Tans (2011) “Spatial and temporal resolution of carbon flux estimates for 1983-2002”, Biogeosciences, 8 (5), 1309-1331, doi:10.5194/bg-8-1309-2011.
  105. Erickson, T.A., A.M. Michalak, and J.C. Lin (2011) “A data system for visualizing 4-D atmospheric CO2 models and data”, OSGeo Journal, 8, 37-47.
  106. Huntzinger, D.N., S.M. Gourdji, K.L. Mueller, A.M. Michalak (2011) “The utility of continuous atmospheric measurements for identifying biospheric CO2 Flux Variability”, Journal of Geophysical Research - Atmospheres, 116 (D6), D06110, doi:10.1029/2010JD015048.
  107. Gockede, M., D.P. Turner, A.M. Michalak, D. Vickers, B.E. Law (2010) “Sensitivity of a sub-regional scale atmospheric inverse CO2 modeling framework to boundary conditions.” Journal of Geophysical Research – Atmospheres, 115 (D24), D24112, doi:10.1029/2010JG014443.
  108. Steiner, A.L., A.J. Davis, S. Sillman, R.C. Owen, A.M. Michalak, A.M. Fiore (2010) “Observed suppression of ozone formation at extremely high temperatures due to chemical and biophysical feedbacks.” Proceedings of the National Academy of Sciences, 107 (46), 19685-19690, doi:10.1073/pnas.1008336107.
  109. Kort, E.A., A. Andrews, E. Dlugokencky, C. Sweeney, A. Hirsch, J. Eluszkiewicz, T. Nehrkorn, A. Michalak, B. Stephens, C. Gerbig, J. Miller, J. Kaplan, S. Houweling, B.C. Daube, P. Tans, S.C. Wofsy (2010) “Atmospheric constraints on 2004 emissions of methane and nitrous oxide in North America from atmospheric measurements and receptor-oriented modeling framework”, Journal of Integrative Environmental Sciences, 7, S1 (Special Issue), 125–133, doi:10.1080/19438151003767483.
  110. Yadav, V., K.L. Mueller, D. Dragoni, A.M. Michalak (2010) “A geostatistical synthesis study of factors affecting gross primary productivity in various ecosystems of North America”, Biogeosciences, 7 (9), 2655-2671, doi:10.5194/bg-7-2655-2010.
  111. Chatterjee, A., A.M. Michalak, S.R. Paradise, C.E. Miller, A.J. Braverman, R.S. Kahn (2010) “A geostatistical data fusion technique for merging remote sensing and ground-based observations of aerosol optical thickness”, Journal of Geophysical Research – Atmospheres, 115 (D20), D20207, doi:10.1029/2009JD013765.
  112. Mueller, K.L., V. Yadav, P.S. Curtis, C. Vogel, and A.M. Michalak (2010) “Attributing the variability of eddy-covariance CO2 flux measurements across temporal scales using geostatistical regression for a mixed northern hardwood forest”, Global Biogeochemical Cycles, 24 (3), GB3023, doi:10.1029/2009GB003642.
  113. Gockede, M., A.M. Michalak, D. Vickers, D.P. Turner, and B.E. Law (2010) “Atmospheric inverse modeling to constrain regional-scale CO2 budgets at high spatial and temporal resolution”, Journal of Geophysical Research – Atmospheres, 115 (D15), D15113, doi:10.1029/ 2009JD012257.
  114. Gourdji, S.M., A.I. Hirsch, K.L. Mueller, V. Yadav, A.E. Andrews, and A.M. Michalak (2010) “Regional-scale geostatistical inverse modeling of North American CO2 fluxes: A synthetic data study”, Atmospheric Chemistry and Physics, 10 (13), 6151–6167, 2010, doi:10.5194/acp-10-6151-2010.
  115. Zhou, Y., and A.M. Michalak (2009) “Characterizing attribute distributions in water sediments by geostatistical downscaling”, Environmental Science and Technology, 43 (24), 9267-9273, doi:10.1021/es901431y.
  116. Batterman, S.,  J. Eisenberg, R. Hardin, M.E. Kruk, M.C. Lemos, A.M. Michalak, B. Mukherjee, E. Renne, H. Stein, C. Watkins, and M.L. Wilson (2009), “Sustainable Control of Water-Related Infectious Diseases: A Review and Proposal for Interdisciplinary Health-Based Systems Research”, Environmental Health Perspectives, 117 (7), 1023-1032, doi:10.1289/ehp.0800423.
  117. Alkhaled, A.A., A.M. Michalak, S.R. Kawa (2008) “Using CO2 spatial variability to quantify representation errors of satellite CO2 retrievals”, Geophysical Research Letters, 35 (16), L16813, doi:10.1029/2008GL034528.
  118. Mueller, K.L., S.M. Gourdji, and A.M. Michalak (2008), “Global monthly-averaged CO2fluxes recovered using a geostatistical inverse modeling approach: 1. Results using atmospheric measurements” Journal of Geophysical Research – Atmospheres, 113 (D21), D21114,doi:10.1029/2007JD009734.
  119. Gourdji, S.M., K.L. Mueller, K. Schaefer, and A.M. Michalak (2008) “Global monthly-averaged CO2 fluxes recovered using a geostatistical inverse modeling approach: 2. Results including auxiliary environmental data”, Journal of Geophysical Research – Atmospheres, 113 (D21), D21115, doi:10.1029/2007JD009733.
  120. Alkhaled, A.A., A.M. Michalak, S. Olsen, S.R. Kawa, J.-W. Wang (2008, “A global evaluation of the regional spatial variability of column integrated CO2 distributions”, Journal of Geophysical Research – Atmospheres, 113 (D20), D20303, doi:10.1029/2007JD009693.
  121. Michalak, A.M. (2008) “A Gibbs sampler for inequality-constrained geostatistical interpolation and inverse modeling”, Water Resources Research, 44 (9), W09437, doi:10.1029/2007WR006645.
  122. Michalak, A.M. (2008) “Adapting a fixed-lag Kalman smoother to a geostatistical atmospheric inversion framework”, Atmospheric Chemistry and Physics, 8 (22), 6789–6799, doi:10.5194/acp-8-6789-2008.
  123. Miller, C.E., D. Crisp, P.L. DeCola, S.C. Olsen, J.T. Randerson, A.M. Michalak, A. Alkhaled, P. Rayner, D.J. Jacob, P. Suntharalingam, D. Jones, A.S. Denning, M.E. Nicholls, S.C. Doney, S. Pawson, H. Boesch, B.J. Connor, I.Y. Fung, D. O’Brien, R.J. Salawitch. S.P. Sander, B. Sen, P. Tans, G.C. Toon, P.O. Wennberg, S.C. Wofsy, Y.L. Yung, R.M. Law (2007) “Precision requirements for space-based data”, Journal of Geophysical Research, 112 (D10), D10314, doi:10.1029/2006JD007659.
  124. Michalak, A.M., and S. Shlomi (2007) “A geostatistical data assimilation approach for estimating groundwater plume distributions from multiple monitoring events”, Invited paper, Subsurface Hydrology: Data Integration for Properties and Processes, American Geophysical Union (AGU) Geophysical Monograph Series 171, doi:10.1029/171GM08.
  125. Shlomi, S. and A.M. Michalak (2007) “A geostatistical framework for incorporating transport information in estimating the distribution of a groundwater contaminant plume”, Water Resources Research, 43 (3), W03412, doi:10.1029/2006WR005121.
  126. Adriaens, P., M.-Y. Li, and A.M. Michalak (2006) “Scaling methods of sediment bioremediation processes and applications”, Engineering in Life Sciences, 6 (3), 217-227, doi:10.1002/elsc.200520127.
  127. Hirsch, A.I., A.M. Michalak, L.M. Bruhwiler, W. Peters, E.J. Dlugokencky, and P.P. Tans (2006) “Inverse modeling estimates of the global nitrous oxide surface flux from 1998-2001”, Global Biogeochemical Cycles, 20 (1), GB1008, doi:10.1029/2004GB002443.
  128. Michalak, A.M., A. Hirsch, L. Bruhwiler, K.R. Gurney, W. Peters, and P.P. Tans (2005, “Maximum likelihood estimation of covariance parameters for Bayesian atmospheric trace gas surface flux inversions”, Journal of Geophysical Research, 110 (D24), D24107, doi:10.1029/ 2005JD005970.
  129. Bruhwiler, L.M.P., A.M. Michalak, W. Peters, D.F. Baker, and P. Tans (2005) “An improved Kalman smoother for atmospheric inversions”, Atmospheric Chemistry & Physics, 5 (10), 2691-2702, doi:10.5194/acp-5-2691-2005.
  130. Michalak, A.M., and P.K. Kitanidis (2005) “A method for the interpolation of nonnegative functions with an application to contaminant load estimation”, Stochastic Environmental Research and Risk Assessment,19, 8-23, doi:10.1007/s00477-004-0189-1.
  131. Michalak, A.M., L. Bruhwiler, and P.P. Tans (2004) “A geostatistical approach to surface flux estimation of atmospheric trace gases”, Journal of Geophysical Research, 109 (D14), D14109, doi:10.1029/2003JD004422.
  132. Michalak, A.M., and P.K. Kitanidis (2004) “Estimation of historical groundwater contaminant distribution using the adjoint state method applied to geostatistical inverse modeling”, Water Resources Research, 40 (8), W08302, doi:10.29/2004WR003214.
  133. Michalak, A.M., and P.K. Kitanidis (2004) “Application of geostatistical inverse modeling to contaminant source identification at Dover AFB, Delaware”, IAHR Journal of Hydraulic Research, 42, S1 (Special Issue), 9-18.
  134. Michalak, A.M., and P.K. Kitanidis (2003) “A method for enforcing parameter nonnegativity in Bayesian inverse problems with an application to contaminant source identification”, Water Resources Research, 39 (2), 1033, doi:10.1029/2002WR001480.
  135. Michalak, A.M. (2002) “Environmental contamination with multiple potential sources and the common law: Current approaches and emerging opportunities”, Fordham Environmental Law Journal, XIV (1), 147-206.
  136. Michalak, A.M., and P.K. Kitanidis (2000) “Macroscopic behavior and random walk particle tracking of kinetically sorbing solutes”, Water Resources Research, 36 (8), 2133-2146, doi:10.1029/2000WR900109.

 

 

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